Jim Balhoff

'actively involved in' has wrong domain

8

'actively involved in' has description "holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes"....

OBI is adding invalid subclass axioms to ChEBI

5

`obi.owl` and `obi-base.owl` include this axiom: - [luciferin](http://purl.obolibrary.org/obo/CHEBI_25078) SubClassOf [molecular entity](http://purl.obolibrary.org/obo/CHEBI_23367) This axiom is not in ChEBI, and is also logically incompatible, since [luciferin](http://purl.obolibrary.org/obo/CHEBI_25078) is a [role](http://purl.obolibrary.org/obo/CHEBI_50906) in ChEBI. Yesterday's...

Fixes #746.

See https://github.com/oborel/obo-relations/pull/749#discussion_r1296147714

Update merged import.

1

~Updating this and making a release will solve a problem we're having in GO.~ Actually now that I see the diff, I see we have a chicken and egg problem;...

Use RO or SO numeric identifiers for properties

3

SO contains a number of object properties using hash IRIs that don't resolve and don't follow the OBO identifier policy. Lots of these are identical to relations in RO. Would...

Reasoner::getReasonerName returns null

22

Calling `Reasoner::getReasonerName` returns `null`. I'm using release `"net.sourceforge.owlapi" % "org.semanticweb.hermit" % "1.4.0.432"` in a Scala application. I see it's implemented as `getClass().getPackage().getImplementationTitle()`; I guess this needs to be in the...

Current OBO file fails to parse via OWL API (Protege, ROBOT)

6

There is a term in the ChEBI OBO file with a label containing an opening brace: ``` [Term] id: CHEBI:187876 name: N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-[alpha-D-Fuc-(1->6)]-beta-D-GlcNAc}-Asn residue is_obsolete: true ``` In [OBO syntax](https://owlcollab.github.io/oboformat/doc/obo-syntax.html) the...

In the latest release of NCIT Plus, there are a few unsatisfiable classes (not sure how this got through the Makefile... will check). These result from mappings of subclasses of...

main NCIt no longer downloadable from its ontology IRI

3

@fragosog I have previously obtained the latest NCIt from its ontology IRI `http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl`. Today I'm getting an error: `curl: (7) Failed to connect to ncicb.nci.nih.gov port 80: Operation timed out`...