Jim Balhoff

Results 137 issues of Jim Balhoff

If an option type is boolean, and a default value of `true` is provided, there doesn't seem to be a way to set it to false on the command line:...

I noticed that definitions in the JSON schema must be capitalized for Argus to work. For this example adapted from the Argus readme: ```scala package test import argus.macros._ import io.circe._...

For this [document in the JSON-LD Playground](http://tinyurl.com/zwkwe69): ``` json { "@context": [ "https://raw.githubusercontent.com/monarch-initiative/monarch-app/master/conf/monarch-context.jsonld", { "ex": "http://example.org/", "ex:friendOf": { "@type": "@id" }, "ex:hasFriend": { "@type": "@id" } } ], "@id": "3456",...

bug

In Protege 5.5, when I compute explanations for unsatisfiable classes, the "Stop searching" button is frequently unresponsive. So Protege continues to compute explanations while I keep trying to click the...

Type: Enhancement

Previously (v. 2.1.4) I've been using the [bigdata-core](https://search.maven.org/artifact/com.blazegraph/bigdata-core) Maven dependency for embedding Blazegraph within a Java application. This doesn't seem to be published anymore for 2.1.5+. What is the recommended...

Resolves #1026. - [ ] `docs/` have been added/updated - [x] tests have been added/updated - [x] `mvn verify` says all tests pass - [x] `mvn site` says all JavaDocs...

Resolves [#ISSUE, resolves #ISSUE] - [x] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn...

We are converging on OBO-wide conventions for referencing URLs as annotation values. We would prefer to use real IRIs instead of strings with datatype `xsd:anyURI`. Need to: - [ ]...

Infrastructure

[ribosomal-protein-alanine N-acetyltransferase complex](http://purl.obolibrary.org/obo/GO_0009323) has an xref to RHEA:43752.

enzymes
xref & mappings

Right now there is a lot of unnecessary output, and it makes it hard to find errors when there is a failure.

Infrastructure