uberon icon indicating copy to clipboard operation
uberon copied to clipboard

Add present_in_taxon statements

Open balhoff opened this issue 7 months ago • 5 comments

Add present_in_taxon statements for male and female external genitalia to ensure they work in both mammals and insects. These terms are used in the AISM ontology; this will ensure that the usage remains valid as the ontology changes.

cc @JCGiron @sergeitarasov

balhoff avatar Jan 12 '24 19:01 balhoff

I would also edit the definition of external male genitalia to make it clear that "including the penis and scrotum" is just an example and not the whole extent of the usage of this term.

JCGiron avatar Jan 12 '24 22:01 JCGiron

Thanks @JCGiron, I made a small tweak to the definition.

balhoff avatar Jan 16 '24 01:01 balhoff

This looks good. You should feel free to propose a more significantly altered definition that is less biased to mammals (I am not a fan of the GO-style definitions that say "an example of this is found in " when the true applicability is much broader).

@balhoff I have some ideas about more powerful present-in axioms that would entail some of these more specific statements

On Mon, Jan 15, 2024 at 5:00 PM Jim Balhoff @.***> wrote:

Thanks @JCGiron https://github.com/JCGiron, I made a small tweak to the definition.

— Reply to this email directly, view it on GitHub https://github.com/obophenotype/uberon/pull/3172#issuecomment-1892924579, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAAMMOLKPJO25GDRQYEU763YOXGLRAVCNFSM6AAAAABBYTLZMGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQOJSHEZDINJXHE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

cmungall avatar Jan 16 '24 16:01 cmungall

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

github-actions[bot] avatar Feb 16 '24 01:02 github-actions[bot]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

github-actions[bot] avatar May 10 '24 01:05 github-actions[bot]