Jim Balhoff
Jim Balhoff
**Describe the bug** Blank nodes in an HDT document are returned as URIRefs in Python. **To Reproduce** Create an HDT document based on this Turtle input: ```turtle _:a . _:a...
@cmungall noted that there is not a way to output these when a mapping is in the singleton group.
Something went wrong with defined_class_label here: https://github.com/geneontology/go-ontology/blob/master/docs/patterns/symporter_activity.md Not sure if software issue or not, just leaving here to look into.
### Version 5.6.0 ### What happened? Running `riot --validate myfile.ttl` should exit with a non-zero code in the case of errors, which it does. However, it also exits with `1`...
From @pgaudet: FROM_REACTION_ID TYPE TO_REACTION_ID (A) 10024 (specific version of B) is_a (B) 51736 if A is an xref : no action if B exists, and A does not exist:...
Review which xrefs we would lose if we dropped the ontology ones and just imported these from Rhea.
Add info about #30973 to https://wiki.geneontology.org/Guidelines_for_database_cross_references.
Should we include [uv](https://docs.astral.sh/uv/) in ODK?
Given a Biolink term IRI like `https://w3id.org/biolink/vocab/ChemicalEntity`, this is redirected to: `https://biolink.github.io/biolink-model/docs/ChemicalEntity` however this gives a 404 and it seems like it would be better to redirect to: `https://biolink.github.io/biolink-model/ChemicalEntity`
[enables](http://purl.obolibrary.org/obo/RO_0002327) has a synonym 'has'. This is extremely broad, and I would say useless. It just uses the annotation [alternative label](http://purl.obolibrary.org/obo/IAO_0000118) rather than any more specific term such as [has...