Jim Balhoff

In GO, we are trying to update to the latest obographs in ROBOT. We have been using owltools, which uses an older obographs release. We noticed this change, which currently...

Add regulates to relations which propagate 'in taxon'.

3

The historical usage of 'regulates' assumes it is within a single organism. For this reason we have the term [regulates in another organism](http://purl.obolibrary.org/obo/RO_0002010) without that assumption. This PR adds 'regulates'...

Provide cob-base and redirect cob-to-external.owl to it

9

`curl -L -O 'https://purl.obolibrary.org/obo/cob/cob-to-external.owl'` returns 404.

@matentzn suggests using this product: https://github.com/obophenotype/upheno-dev/releases/download/2025-01-11/upheno-base-with-bridge.owl

https://github.com/INCATools/ubergraph/blob/master/ci/test-merged.sh

I am currently building Ubergraph using version [1.5](https://hub.docker.com/layers/monarchinitiative/ubergraph/1.5/images/sha256-fb5a4e880ca1013112b384c42e92f4fea83da0099b71774c03bde478ec9c33a2?context=explore). I tried to update a couple of times and ran into some issues involving Souffle and Jena that I didn't have time...

Currently DisjointUnion doesn't provide any inferences, but it does with ELK 0.6.0.

suggestion: materialize 'part of'

3

It would be nice for ENVO to materialize 'part of' relationships in the release. This will simplify traversal in OLS. ENVO uses some specialized sub properties of 'part of' such...