Jim Balhoff

'Vulvar hemangioma' logical definition problem

9

This issue is contributing to incoherency in the Ubergraph build. **HPO term** [Vulvar hemangioma](http://purl.obolibrary.org/obo/HP_0410272) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased amount](http://purl.obolibrary.org/obo/PATO_0000470) and ([characteristic_of](http://purl.obolibrary.org/obo/RO_0000052) some ([Hemangioma](http://purl.obolibrary.org/obo/HP_0001028) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [external female genitalia](http://purl.obolibrary.org/obo/UBERON_0005056)))) and...

Fixes #28146.

Owltools is no longer supported, and the targets that use it will become harder and harder to maintain over time.

Add EC to one-to-one-xrefs-by-value-violation.sparql

3

These ECs are currently xrefs for multiple GO terms (and are causing this PR to fail checks): ---- Added to spreadsheet https://docs.google.com/spreadsheets/d/17QvDQoIXe-Rim9ReReVlZGntr-WkIGJ0cbPhaQDB_As/edit#gid=0 ---- - [ ] - EC:1.17.4.- — http://purl.obolibrary.org/obo/GO_0051064...

I think all changes are related to compaction of IAO:0000233 when used in an axiom annotation, and a few tweaks to usages of the creation_date tag. But it results in...

Server in test no longer available

2

@kltm these tests no longer pass, since this server is offline. Any replacement? https://github.com/owlcollab/owltools/blob/9faa4f42b761839a26e8c8096cd24044e2bdcfc7/Golr-Client/src/test/java/org/bbop/golr/java/RetrieveGolrAnnotationsTest.java#L72

hdtCat error in LongArrayDisk with large files

6

I'm trying to merge two HDT files using `hdtCat.sh`. Each file has more than 13 billion triples: - file 1 has `13736601325` triples - file 2 has `13827925785` triples After...

GPAD/GPI spec fixes

3

- allow slashes in ID local part - change relation list to SHOULD - allow other properties but require values of known properties to match grammar in table

error in LongArrayDisk when trying to run qepSearch.sh on large HDT file

2

### Part of the endpoint? (leave empty if you don't know) - [ ] Backend (qendpoint-backend) - [ ] Store (qendpoint-backend) - [ ] Core (qendpoint-core) - [ ] Frontend...

Can't find variable: Buffer

6

#### Issue type: - :bug: Bug ____ #### Description: Including an OPTIONAL block within my query leads to an error within Comunica, and failure of the query. The error shown...