Jim Balhoff

eliminate OBO hash IRIs

5

A number of ontologies have properties with non-standard OBO identifier structures. These reduce integration in Ubergraph. Ideally all these would be either added to RO or given identifiers in their...

adding knowledge graph links with different semantics

3

Currently the semantics of the edges in the two relation graphs is: - `X rdfs:subClassOf Y` means `X SubClassOf Y` - `X R Y` (if `R` != `rdfs:subClassOf`) means `X...

Seems like this is coming from the domain of 'has plasma membrane part': https://ontobee.org/ontology/CL?iri=http://purl.obolibrary.org/obo/CL_0002419 We should have some bridging axioms from CL to CARO/Uberon anatomical structure. cc @hlapp

Use ELK 0.5+ in coherency check

1

The [coherency check](https://github.com/INCATools/ubergraph/blob/master/ci/test-merged.sh) relies on the ELK 0.4.3 in ROBOT, which doesn't handle object property ranges. For a stronger check we should find a way to use a newer ELK...

add issue generation to coherency check

1

See https://github.com/obophenotype/uberon/issues/2536#issuecomment-1158512248

QC of new Ubergraph builds

1

What kind of QC should we have in the Ubergraph build? Right now there is very little. If the build completes, and the database is about the expected size, I...

Provide downloadable artifacts

1

- RDF - OWL - KGX Should include metadata about asserted/inferred, direct/indirect (at least in KGX) cc @cmungall @cbizon

Add DO

1

Check to make sure MONDO doesn't have equivalentClass axioms to DOID that will cause undesired inferences.