Jim Balhoff
Jim Balhoff
A number of ontologies have properties with non-standard OBO identifier structures. These reduce integration in Ubergraph. Ideally all these would be either added to RO or given identifiers in their...
Currently the semantics of the edges in the two relation graphs is: - `X rdfs:subClassOf Y` means `X SubClassOf Y` - `X R Y` (if `R` != `rdfs:subClassOf`) means `X...
Seems like this is coming from the domain of 'has plasma membrane part': https://ontobee.org/ontology/CL?iri=http://purl.obolibrary.org/obo/CL_0002419 We should have some bridging axioms from CL to CARO/Uberon anatomical structure. cc @hlapp
The [coherency check](https://github.com/INCATools/ubergraph/blob/master/ci/test-merged.sh) relies on the ELK 0.4.3 in ROBOT, which doesn't handle object property ranges. For a stronger check we should find a way to use a newer ELK...
See https://github.com/obophenotype/uberon/issues/2536#issuecomment-1158512248
What kind of QC should we have in the Ubergraph build? Right now there is very little. If the build completes, and the database is about the expected size, I...
- RDF - OWL - KGX Should include metadata about asserted/inferred, direct/indirect (at least in KGX) cc @cmungall @cbizon
Add DO
Check to make sure MONDO doesn't have equivalentClass axioms to DOID that will cause undesired inferences.