Jim Balhoff
Jim Balhoff
Trying to run `make` I encounter this error: ``` ccdhmodel jim (main)$ make rm -rf target/docs mkdir -p target/docs pipenv install Creating a virtualenv for this project... Pipfile: /Users/jim/Documents/Source/ccdhmodel/Pipfile Using...
Currently an instance of `Coding` looks like this: ```yaml collection_site: # type = BodySite site: # type = CodeableConcept coding: # type = Coding - code: C12468 label: Lung system:...
The Uberon taxon-independent common_anatomy subset is replacing the obsolete CARO ontology. It would be helpful to GO's usage of Plant Ontology terms if there were more links from PO to...
``` wget http://purl.obolibrary.org/obo/upheno/data/omim-disease-phenotype.owl -O src/test/resources/data/omim-disease-phenotype.owl --2016-05-16 13:57:07-- http://purl.obolibrary.org/obo/upheno/data/omim-disease-phenotype.owl Resolving purl.obolibrary.org... 52.3.123.63 Connecting to purl.obolibrary.org|52.3.123.63|:80... connected. HTTP request sent, awaiting response... 302 Moved Temporarily Location: http://build.berkeleybop.org/view/Monarch/job/generate-triples-from-nif/lastSuccessfulBuild/artifact/target/omim-disease-phenotype.owl [following] --2016-05-16 13:57:08-- http://build.berkeleybop.org/view/Monarch/job/generate-triples-from-nif/lastSuccessfulBuild/artifact/target/omim-disease-phenotype.owl Resolving...
Load associations from a phenopacket.
Input phenotype profiles for analysis from a phenopacket file.
If there is an axiom `C SubClassOf (fatherOf some child) and (fatherOf only child)`, currently Whelk will throw out the whole axiom (same as ELK 0.4.3). But Whelk should be...
#### Issue type: - :bug: Bug ____ #### Description: I am using `QueryEngine.query` in my own application, to handle user entered queries of any type (SELECT, CONSTRUCT, ASK). I switch...