Jim Balhoff

Results 608 comments of Jim Balhoff

We should discuss URI expansions for SKOS predicate values in the OBO prefixes Slack channel.

Consider merging external x2go mappings into the built ontology for release: https://github.com/geneontology/go-ontology/blob/111d6fbe6ea1b68639f71a52985bfe2f3fa4a44a/src/ontology/Makefile#L612-L622 Also, consider retrieving external x2go mappings directly as SSSOM.

> Thanks Jim! Does this list filter out obsolete terms (which may still have EC refs attached, as discussed? Ah—this does include obsolete terms. Currently we enforce this over both...

You can use `contributor-id` 0 or more times on a given line in column 12. Each `contributor-id` has a single ORCID value. Single-valued meaning the grammar doesn't provide a way...

> [@balhoff](https://github.com/balhoff) is there any other action to be taken here or can this be closed? You handled the first two changes in #5347. It doesn't seem like we came...

@kltm I know what's going on. It's due to the OBO prefixes support, which has been a lot more trouble than I expected. It's especially bad here because the NEO...

@kltm here is what I had in mind: https://github.com/geneontology/neo/pull/119

Some of the XENBASE `with` entries have multiple IDs but only one XENBASE prefix, for example: ``` models/666b894f00001795.ttl: "XENBASE:XB-MORPHOLINO-22249065; XB-MORPHOLINO-29212937"^^ ; models/666b894f00001795.ttl: "XENBASE:XB-MORPHOLINO-22249065; XB-MORPHOLINO-29212937"^^ ; models/666b894f00001795.ttl: "XENBASE:XB-MORPHOLINO-22249065; XB-MORPHOLINO-29212937"^^ ; models/657ba49f00000796.ttl:...

@vanaukenk here are the entries containing `XENBASE`: https://docs.google.com/spreadsheets/d/1QTpfSTlFpLuzFaNk_Ek2GdCqXpK5ftYxkPbkackw6CY/edit?usp=sharing