Jim Balhoff

Results 608 comments of Jim Balhoff

I think the title of my issue is inaccurate; this query with no OPTIONAL results in a similar error `ReferenceError: Can't find variable: Buffer`: ```sparql PREFIX rdfs: SELECT * WHERE...

@raymond91125 here you go: ![image](https://github.com/user-attachments/assets/5a02d20d-2e47-49a3-a5f2-a44475fc3c79) anion vs. cation seems to be the issue.

> 1. I can confirm that [UBERON:0000165 mouth](http://purl.obolibrary.org/obo/UBERON_0000165) is not part of [UBERON:0001456 face](http://purl.obolibrary.org/obo/UBERON_0001456). Revising the HPO subclass assertion that an `Abnormality of the mouth` is an `Abnormality of the...

Why not include `only in taxon` usages in the list? There are taxa used in GO that aren't in your current list.

> Jim: They are on a different tab Thank you @bpeters42, I totally missed that.

Aha, now that I submitted this issue, I looked back at my demo query. I had not removed the `LIMIT 10` from the ASK version. Removing this makes it work...

@nlharris we are waiting for the reviewer (me) to do something. Sorry for the delay, I am actually looking at it right now.

Here is my submission review: # Review criteria - [x] Ontology scope - [x] Do the terms fall within the ontology’s stated target domain of knowledge? - [x] Was the...

@suzialeksander I think your changes look good! I talked to @pgaudet and we are going to check on the managers call whether we want to allow extra properties in the...

One option would be to use [relation-graph](https://github.com/INCATools/relation-graph) and then merge the output using ROBOT: ``` relation-graph --ontology-file input.owl --mode OWL --output-file relations.nt --property 'http://purl.obolibrary.org/obo/RO_0002162' --output-subclasses false ``` or leave off...