Jim Balhoff
Jim Balhoff
Such axioms are used by GO. When the GO makefile creates its NCBI taxon import module, it uses an owltools command to generate disjoint by in_taxon axioms. One of the...
@addiehl in my opinion it doesn't make sense to use 'only in taxon' within equivalence axioms, since data with asserted or inferred taxon links will generally always be in terms...
@addiehl that sounds good! I actually came across those PRO 'only in taxon' usages a while back and it has been in the back of my mind ever since. That's...
@kimrutherford probably that model needs to be re-saved to trigger the fix.
@vanaukenk I think the number of affected models may be a bit larger than we realized, but I am still rechecking that my query is accurate. I will let you...
It's any gene product used anywhere in the model.
@vanaukenk here are the models found by my query (some of these are already fixed in the live system): Models with incorrect taxon links - [ ] | - [...
> but more generally, I have had issues with making the TTL convert to OWL. It seems like it's finally too big. I tried adding `ROBOT_JAVA_ARGS=-Xmx32G` to the makefile, but...
> > I don't know why I also see a bunch of "amino acid zwitterion" -> "amino-acid zwitterion" changes in ChEBI terms?? > > This can be ignored, it's just...
@gouttegd I had originally suggested UUIDs so that there was no chance of identifier collision (at least, astronomically unlikely). There may be some situation where two work branches are merged...