Jim Balhoff

Results 608 comments of Jim Balhoff

[Here's a query](https://api.triplydb.com/s/qYJuz7U_R) grouping as requested: ```sparql PREFIX owl: PREFIX rdf: PREFIX rdfs: PREFIX xsd: PREFIX part_of: PREFIX BP: SELECT (STR(MIN(?rel_label)) AS ?rel_name) (GROUP_CONCAT(DISTINCT ?cam ; separator=" | ") AS...

Table of 20 relations |rel_name |models | |-----------------------------------------------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| |positively regulates |http://model.geneontology.org/6115be0900000695 | http://model.geneontology.org/6115be0900001004 | http://model.geneontology.org/5df932e000000833 | http://model.geneontology.org/6115be0900000553 | http://model.geneontology.org/5db9c9a500000677 | http://model.geneontology.org/613aae0000000915 | http://model.geneontology.org/5e72450500001203 | http://model.geneontology.org/5d29221b00000131 | http://model.geneontology.org/5e72450500003254 | http://model.geneontology.org/5d29221b00001310 |...

Thanks @ukemi. I just brought these up because the URLs didn't resolve and they don't seem to be in NEO. Should they be in NEO? Maybe we should migrate to...

Actually we already have `"ENA": "http://www.ebi.ac.uk/ena/data/view/"` in the Minerva context, which seems to resolve those IDs as well.

@ukemi I'm not sure why they're not in NEO already, so maybe we should get clear on that first. I'm technically off today, so maybe we can look at that...

@vanaukenk if need be we could use a different property for the automatic comments. We could update all the existing ones with SPARQL.

@vanaukenk what if there are multiple has_input extensions? Do we: * Pipe-separate the values (I think this is legal after looking at the [spec](http://geneontology.org/page/gene-product-association-data-gpad-format)) * Create a separate annotation based...

Here are some: http://yasgui.org/short/SJLhaKlAf We can only query for production models there, however.

I now wonder if my query isn't specific enough—I didn't check the evidence code for example.

The currently allowed qualifiers are here: https://github.com/geneontology/minerva/blob/master/minerva-converter/src/main/resources/org/geneontology/minerva/legacy/sparql/gpad-basic.rq#L27-L35