Jim Balhoff
Jim Balhoff
Are they stored anywhere in Solr?
The relation is not in the current snapshot go-gaf. It is in the 2021-08-18 release of go-gaf, but not the 2021-08-18 release of go.owl. I think it must have lingered...
I think it's two problems: - go-gaf imports gorel, which is not rebuilt that often. It can have stale RO content. - Even if gorel is updated (which it seems...
@cmungall what is the origin of taxslim? Should we just expand GO ncbitaxon_import as needed and extract with ROBOT? Could keep a seed file in addition to the taxa directly...
Is this a question about the inferred GPAD output? As in you want to suppress the CC annotation that is being generated by the GPAD inference?
I tried to think of some tricks you could do with leaving off evidence on the edge to 'vacuolar lumen', however I think that would also remove the term from...
We should discuss this in a Noctua call @vanaukenk @ukemi.
@pgaudet yes I think so; the actual label value in NEO is 'URS000012F9EC_9606 Hsap'.
The cells in that row (and all the rows) of the GPI look like this: ```tsv 1. RNAcentral 2. URS000012F9EC_9606 3. 4. Homo sapiens (human) hsa-miR-4691-3p 5. 6. miRNA 7....
There is no Pubmed info in there besides triples like `pmid:12345 dct:references UBERON:1234567`. Also so far we don't have a pipeline to keep it up to date. I loaded the...