Jim Balhoff
Jim Balhoff
Maybe this is a good place to put this question: is it okay for group labels that end up being used as a value for `assigned-by` in GPADs to contain...
So it should be sufficient to replace space with underscore during GPAD export.
@kltm I agree—a dedicated field will also help prevent the label being changed without consideration for its usage as a "key" elsewhere.
We could use `shorthand` and map it to `oboInOwl:shorthand`, which is found as an annotation property in GO. However, I don't see `shorthand` actually declared in http://www.geneontology.org/formats/oboInOwl.
Yes, I'll need to update the annotation property used to get the value for GPAD.
Group shorthands have now made their way into the GPAD Jenkins job.
> Is there a specific subset of uniprot that you're interested in? Any terms referenced within SYNGO models.
@cmungall any thoughts on property to use? What about http://purl.obolibrary.org/obo/RO_0002472 `is evidence for`?
I was imagining it as OP from evidence instance to gene product instance.
@goodb the procedure you're describing is similar to an approach I advocated at one point. Especially because in the current system the evidences aren't even really on the right edges—very...