Alexis Arnaudon
Alexis Arnaudon
I close this, this is not solving it, it's an issue with ipyparallel, with dask it works without this. Sorry for the noise here.
In fact, this is needed with for example dask-mpi parallelization to prevent neuron to send kill signal and crash everything.
And no idea what is happening with the test haha
Hello! You need to 'sanitize' your morphologies first with this: https://github.com/BlueBrain/NeuroR/blob/master/neuror/sanitize.py. BBP tools assume some minimal standard to deal with morphologies, and it seems (from the warning) that they don't...
also, how do I dl your morphs? Can't find the button on the atlas UI
I don't see much difference between 2 and 3, apart from adding a straight line to connect to soma, or a curly line. It will have the same cons. Imo,...
+1 and it could help here as well: https://github.com/BlueBrain/morph-tool/pull/70
I know these sub_neurite_types: apical_oblique, apical_tuft, apical_trunk, axon_ais, axon_collaterals, axon_main
they are not, the PR above tries to assign them (apical can be split if one knows apical point for example). So if a proper subtype option is available, handling...
Sure, but it does not make sense to have a super-neurite which contains an axon and a basal imo. An axon is an axon, regardless if it is attached to...