Alexis Arnaudon

It seems it needs the 1D/2D specific methods to work.

fix python crash with NEURON8.1.0

7

this is fix related to CELLS-42

Set mpiabort_on_error without ParallelContext

2

## Overview of the feature My code is as follow. I use BluePyOpt to interface NEURON and run many small single cell simulations. I have parallelised my many computations with...

NEURON wheel without X11 => Ability to turn off GUI loading in wheel

22

Would it be possible to have the `pip install NEURON` without any X11, so that it can be used without the `$DISPLAY` variable and not have warning such as ```...

allow for neurites to be attached to neurites

28

Proposal for https://github.com/BlueBrain/NeuroM/issues/975

fix plot limits

3

Automatic limit for matplotlib were done with soma size only, and do not work with cli.

Option to plot nrn_secid labels

1

This adds NEURON section id labels to each section corresponding to the NEURON id of the given section list. It can be used as follow: neurom view --plane xy --nrn-secid...

Introduce GeneralizedModularity

8

We are attempting to introduce leiden solver into Markov Stability with generalized modularity in this other repository here: https://github.com/barahona-research-group/PyGenStability/pull/43 The aim of this PR is to have the option to...

Add path length option to sholl analysis

7

By default the Sholl analysis is done wrt radial euclidean distance, but having path distance as an optional metric for Sholl analysis is sometimes useful. This PR provides such functionality...