Alexis Arnaudon comments

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                                            Alexis Arnaudon

Axon metrics at zero for some files

Funny enough, I just bumped into that issue now. So I looked at neurom a bit more, and found that in core/morphology.py ``` 443 @property 444 def neurites(self): 445 """The...

Axon metrics at zero for some files

Use a self.is_root here to stop when you want? ``` 56 57 @property 58 def parent(self): 59 """Returns the parent section if non root section else None.""" 60 if self.morphio_section.is_root:...

Axon metrics at zero for some files

instead of asking morphio if a section is root (which would be True only for root_sections), set an attribute is_root for neurom sections (which is == morphio_section.is_root for most of...

Axon metrics at zero for some files

How would be break morphio/neurom? Morphio does not know about neurites, and this is only about neurite?

Axon metrics at zero for some files

yes, I mean neuron Section, it has an is_root which is not doing much, we can add a .is_initial or something. Why is it an issue to add a new...

Axon metrics at zero for some files

Attempt here:https://github.com/BlueBrain/NeuroM/pull/977

fix plot limits

aaaah

fix plot limits

I give up...

fix plot limits

solved in another PR

Option to plot nrn_secid labels

So I will move this to morph-tool asap, and close this one afterwards.