Alexander Peltzer
Alexander Peltzer
We'll track it via the milestone 👍
I think we can live with this for now, we'll add support for CheckQC for bclconvert once this is done in nf-core/demultiplex
Smrnaseq has it implemented too - if you're looking for insights how it was implemented there, have a look 👍
Smrnaseq only runs on SE data so the PE was never used. As smrnaseq data is so short, paired end protocols do not make any sense for smrna data. For...
Yes let's add this too. Sounds like something also for the next release
IIRC; checkqc is not compatible with bclconvert output.
Not entirely sure this is (still?) valid, please try to set it up for bclconvert, i will also ask one of the authors.
This is less a pipeline bug but rather a configuration / infrastructure issue 👍🏻
Hi @ziadbkh -I'll take a look soon I hope. Do we have some test data for this to be tested via the CI entirely?
At some point everybody converges 💪😂🤷♂️