demultiplex
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checkqc doesn't run for bclconvert
Description of the bug
I'm running the exact same flowcell, once with bcl2fastq and once with bclconvert. CheckQC only runs when bcl2fastq is selected as demultiplexer.
I'd expect checkQC to run in all cases (at least with Illumina's bcl2fastq/bclconvert, but I don't think there would be any reason not to run it with the other demultiplexers as well?)
CC @apeltzer
Command used and terminal output
No response
Relevant files
BCL2FASTQ
Bclconvert
System information
No response