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checkqc doesn't run for bclconvert

Open grst opened this issue 1 year ago • 3 comments

Description of the bug

I'm running the exact same flowcell, once with bcl2fastq and once with bclconvert. CheckQC only runs when bcl2fastq is selected as demultiplexer.

I'd expect checkQC to run in all cases (at least with Illumina's bcl2fastq/bclconvert, but I don't think there would be any reason not to run it with the other demultiplexers as well?)

CC @apeltzer

Command used and terminal output

No response

Relevant files

BCL2FASTQ image

Bclconvert image

System information

No response

grst avatar Aug 06 '24 06:08 grst