Alexander Peltzer

icon company Boehringer Ingelheim icon location Biberach an der Riss, Germany icon location Large-scale & cloud computing in the life sciences @nf-core . My private account. @[email protected]

Results 278 comments of Alexander Peltzer

Update-cellranger-modules

I dont mind pushing them there, can do it. Not sure I have the permissions for that though

Update-cellranger-modules

@nf-core/core can someone push the images to quay.io please?

Update-cellranger-modules

Tests run out after 2 hours 🥹

Update-cellranger-modules

[ x ] Removed all unnecessary `nextflow.config` files [ x ] Updated tests to include versions for all submodules (will push one after another, building snapshots on gitpod takes quite...

Update-cellranger-modules

Ok @maxulysse / @fmalmeida - all done and works locally in Gitpod.

Update-cellranger-modules

See resuls from local / gitpod: ![image](https://github.com/nf-core/modules/assets/2359510/ac2d92a1-9921-4efa-b54c-2698a01cdaf1)

Fusioncatcher build fails

@fmalmeida FYI

Fusioncatcher build fails

Yes, I can give it a try (y)

Fusioncatcher build fails

Hm still doesnt work I fear. ![image](https://github.com/nf-core/rnafusion/assets/2359510/0fa8ce7e-d4a5-4cea-8e7b-f1dc4297bd5d) a.) STARfusion build error: nhmmscan --noali --cut_ga --dfamtblout /tmp/BRphdvSPd7 --cpu=24 homo_sapiens_dfam.hmm ref_annot.cdsplus.fa Error, cmd: dfamscan.pl -fastafile ref_annot.cdsplus.fa -hmmfile homo_sapiens_dfam.hmm -dfam_outfile __dfam_ref_annot.cdsplus.fa/dfam.out --masking_thresh --cpu...

Fusioncatcher build fails

> Trying to reproduce, but with dev. I manage to run fusion-report, I would assume your error there is due to a access problem. Are you providing the correct cosmic...