Alexander Peltzer
Alexander Peltzer
Would be good to have the *groups.tsv also shared in the outputs so that one can investigate
Hmm, maybe trickier: Needs several assumptions around data, e.g. organism type, sites files and mapped files.
Any news on this fella? ;-) #6662 sits there and waiting :-P
Would also be good to output the Undetermined in a separate channel, similar to what bcl2fastq/bclconvert do at the moment - that way would behave more consistently :)
I think this was fixed in https://github.com/nf-core/modules/pull/6194 already
Fair point, lets wait for @julicudini
There was already an updated version of the cellranger module - maybe check if its fine there @julicudini and if not reopen? :-)
Voting for next release, hopefully faster than the 1.7.0 - this could become part of 1.7.1 then? Can you try the current impementation already?