aclum

Results 158 comments of aclum

2024 nmdc-schema paper?

please check with @emileyfadrosh, there is already an overall NMDC paper planned.

Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records

This duplicates https://github.com/microbiomedata/issues/issues/596

Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records

Let's drop this omics processing record for now, the schema can't handle multiple seq runs until Berkeley schema.

Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records

@mbthornton-lbl please close if complete.

remove `was_informed_by` from `WorkflowExecution`

@mbthornton-lbl per discussions with Shane and the other workflow folks we need to keep was_informed_by for now b/c not all records have has_output specified so this would orphan records.

Add missing file_name_pattern to file type enums for metatranscriptomes

This is lower priority now, b/c of the schema freeze this won't be ready for GSP so doesn't need to be in the next sprint @ssarrafan

`gold_biosample_identifiers` slots returning “Multivalued: False” to Runtime API

@eecavanna would you please confirm runtime is now using SchemaView and recognizes gold_biosample_identifiers as multivalued:true?

`src/schema/core.yaml` has a `IGSN`-prefixed example, but `igsn` is NMDC' preferred prefix

@turbomam is there way to find these types of problems programmatically with linkml-validate?

create `QuantityValueCelsius` class with `unit.pattern` = 'Cel'

I believe this ticket should be closed as we aren't adding this class anymore.

create `QuantityValueMeter` class with `unit.pattern` = 'm'

I believe this should also be closed since we aren't making this class anymore.