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@sierra-moxon is there a way to get this generated and up on the website as a markdown file or something similar? Is gen-prefix-map part of linkml or this is specific...
linked issues - https://github.com/microbiomedata/issues/issues/430 - [Re-ID NOM and Metabolomics OmicsProcessing, DataObjects, AnalysisActivies#524](https://github.com/microbiomedata/issues/issues/524)
Everything from berkeley-schema-fy24 is now in nmdc-schema.
Closing since this merges to main-old, not main.
@turbomam to suggest a different directory to put these scripts.
Ideally it would be something more generic, I've had to make other ad hoc scripts (ie https://github.com/microbiomedata/nmdc-schema/blob/main/nmdc_schema/identify_workflow_duplicates_emp500.py) for data clean up and I'd like this to be co-located.
@mslarae13 not really for pooling. These are the fields NEON has for the pooling table uid,domainID,siteID,plotID,namedLocation,startDate,collectDate,eventID,samplingProtocolVersion,genomicsPooledIDList,genomicsSampleID,genomicsSampleCode,sampleCondition,processedBy,remarks,genomicsDataQF
unchecking #1537 b/c we need to evaluate if we can repair referential integrity (not all omics_processing_set records have has_output populated or if we need to leave was_informed by. Simplest thing...
This is acceptable to me, I've addressed Eric's comments about the paths in the README.md file and have requested a re-review.
This was discussed today at the metap meeting and folks agree on adding this as a Class to the schema with the slots as required. I talked with @cmungall about...