aclum

Note that the child python process is blocking on pthread_mutex_lock() that is part of the jemalloc library, while dmtcp is processing the fork() request that OpenMP calls while the executable...

Hi, We are using 4.4.103-6.38_4.0.149-cray_ari_c. DMTCP version is 3.0.0. We are working on the Cori system at NERSC, I believe you guys have a collaboration so let them know if...

Any update on this?

Any update here?

Hi, Mario was able to install the patch for me. I confirmed that now dmtcp_launch works I can get spades to complete successfully. However, restarting from a checkpoint doesn't work....

Hi, Without the redirect of stdout and stderr this works for me but only interactively. If I write these as bash scripts I get the same error. Where script1 is...

Would you tell me where your build is located? When I try and run make check on Denovo I get nocheckpoint ckpt:PASSED rstr:PASSED; ckpt:FAILED root-pids: [5514] msg: checkpoint error, 1...

We have had good success with graviton2 with other bioinformatics tools and would also be interested of a version of megathit which compiles on ARM.

From BBTools, BBMap and BBcms both run on graviton2. These are AWS blog posts on peregrine and bwa on graviton2 https://aws.amazon.com/blogs/publicsector/accelerating-genome-assembly-aws-graviton2/ https://aws.amazon.com/blogs/publicsector/generalized-approach-benchmarking-genomics-workloads-cloud-bwa-read-aligner-graviton2/

I made some progress on getting MEGAHIT working on ARM but am stalled on the third issue The first issue is with x86 specific flags (-mbmi2 & -mpopcnt) which can...