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igsn_identifiers global definition shows range as string

@turbomam how linkml:Any better than string? It seems worse that uriorcurie.

igsn_identifiers global definition shows range as string

range is now ExternalIdentifier see https://github.com/microbiomedata/nmdc-schema/pull/2671

do a poetry update?

poetry.lock file was generated with poetry version 2.1.4 in main, latest on pypi is 2.2.1. As of last week we are using 2.2.1 for nmdc_automation and haven't encountered any issues.

2710 add slot to biosample to track metadata origin

@turbomam this is ready for re-review

would metref meet our content and format needs as a metabolite namespace?

@kheal is this still needed?

define "soft schema freeze" along with exceptions framework

exception framework proposal: 1. addition of python scripts to nmdc_schema 2. New permissible values for enumerations (ie FileTypeEnum) 3. changes to description/comment slots 4. schema bug fixes identified during migration...

define "soft schema freeze" along with exceptions framework

1. would include python changes in both nmdc-schema, which would then get a back merge to berkeley-schema-fy24, and changes in berkeley-schema-fy24 if need to make them compatible with that version...

define "soft schema freeze" along with exceptions framework

+1 for closing

term ids lacking prefixes fail when generating TTL/RDDF output with run-linkml-examples

I believe this is resolved after re-iding. Are there any slots that you still need a workaround for?

Make `data_object_type` and `data_category` required

workflow automation has a PR in review to add [data_category](https://microbiomedata.github.io/nmdc-schema/data_category/) https://github.com/microbiomedata/nmdc_automation/pull/474