clusterProfiler
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YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
Enrichment analysis is empty. ```r > head(geneList) NQO1 PAPPA MGST1 VCAN CCN2 CCND2 5.36 3.17 2.99 2.96 2.35 2.26 > result dim(result@result) 0 8 ``` but overrepresentation analysis works on...
What should the gene universe ideally be for a scRNA-seq data set, a popular kind of data Bioconductor users have these days?
Hi, I have been trying to run enricher with the predefined list of genes and GO terms. Below is my code. ``` # Read the file file
Hi, I was wondering if we could add a feature to color category and gene's label differently? Currently only the node's color is supported (see example code from the package),...
Hello, I am using the function compareCluster for three different lists of genes (Drosophila melanogaster; flybase Fbgn). When I have the results I observe that not all the genes are...
When clusterProfiler was enriched, the genes in the R package did not have this GO annotation. After enrichment, this gene appeared in the GO entry in the result. I want...
Dear all, I used the upsetplot for the kegg results. It is cropped so that I do not see any of the term names. It seems to be too big....
I use ‘clusterProfiler’ version 4.5.1.902 to do gse analysis, I got gse result and related dotplot, however, I cannot generate ridgeplot. gse
