clusterProfiler
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YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
library(clusterProfiler) 错误: package or namespace load failed for ‘clusterProfiler’ in loadNamespace(j
I have performed gene set enrichment analysis in clusterprofiler and created dotplot. I understand that by default dotplot order by Gene Ratio. But when I sorted my results on GeneRatio,...
Hi, I am trying to run `clusterProfiler::GSEA` version `4.8.3` for each cluster of my SeuratObj When ranking the DEG based on logFC I get a decent ES/NES scores however my...
I am using the enrichKEGG function, but my code, that was working last week does not work anymore. Also the example in the vignette doesn't work anymore: data(geneList, package="DOSE") #Vignette...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/clusterprofiler/#feedback) and followed the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure you are using the latest release version * [x] read the [documentation](https://guangchuangyu.github.io/clusterprofiler/documentation/) * [x]...
Error in loadNamespace(j = 2.27.2 Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace 停止执行 ERROR: lazy loading failed for package ‘clusterProfiler’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/clusterProfiler’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/clusterProfiler’ Warning message: In...
### --> No gene can be mapped.... Hi, I have tried to look for solutions for this in SO, biostars, bioconductor, your html manual, the PDF vignette, and your GitHub...
I was running clusterprofiler in order to see enriched pathways/modules using the KEGG database. One thing I noticed after running everything and looking at my final data output with the...
