clusterProfiler
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Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : replacement has length zero
I use ‘clusterProfiler’ version 4.5.1.902 to do gse analysis, I got gse result and related dotplot, however, I cannot generate ridgeplot.
gse <- gseGO(geneList=gene_list, ont ="ALL", keyType = "SYMBOL", nPerm = 10000, minGSSize = 3, maxGSSize = 800, pvalueCutoff = 0.05, verbose = TRUE, OrgDb = "org.Mm.eg.db", pAdjustMethod = "none")
dotplot(gse, showCategory=10, split=".sign") + facet_grid(.~.sign)
ridgeplot(gse)
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : replacement has length zero