clusterProfiler
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YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
I would like to run the go annotation for the soybean data. As there is no org.db for this organism, I tried to get the go anntation from biomart and...
Hi, I got this error when I run gseKEGG for enrichment, is there any advice to solve this? Thanks. 
Recently I was doing KEGG analysis. Since I was using Rstudio server, I couldn’t control the R version. I didn’t use the latest R package, so I couldn’t map the...
佬好，我想请教一下，由于我的差异基因数目有限，如果按照KEGG或GO富集默认展示作图，bar，tree等，都是根据p.adjust
I want to use the enricher function to enrich positively selected genes from a local made own database. But the code that properly worked last month breaks now. I've checked...
 All the testthat tests have passed , however, I am unable to solve this error while using BiocCheck on clusterProfiler for testing. Kindly help! @GuangchuangYu @cannin
Hi clusterProfiler team, I have been following the guide from clusterProfiler and noticed that the browseKEGG() function does not highlight any genes. I initially tried using my own data and...
hello, I am using enrichGO function from CluserProfiler R package. there is a parameter called universe, and we can use our backround genes by using this parameter. But based on...
KEGG 斑马鱼
你好，我最近在尝试使用斑马鱼的数据做GO和KEGG富集分析，但是这两个函数都需要基因的keytype是ENTREZID，我无法使用bitr函数将斑马鱼的genemname转换成ENTREZID。
Hello, Great package! I was glad to find the compareCluster capability since I have numerous samples that I want to compare. Found that I can use the predefined gene sets...
