clusterProfiler
clusterProfiler copied to clipboard
YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
Hi there, I met issues when trying to generate GO plots using this software. The error messages are as below: > cnetplot(ego, categorySize="pvalue", circular=TRUE, colorEdge=TRUE) Error in geom_node_text(aes_(label = ~name),...
Hi Dr.Yu team, here is my code: emapplot(x3,showCategory =27, layout = "gem",color = "pvalue",cex_label_group = 1,cex_category = 2, cex_line = 1,repel = F,shadowtext = T,split = "category",node_label = "category",with_edge =...
### Prerequisites ``` platform x86_64-w64-mingw32 arch x86_64 os mingw32 crt ucrt system x86_64, mingw32 status major 4 minor 2.1 year 2022 month 06 day 23 svn rev 82513 language R...
Although I use pvalueCutoff, the results still show pvalues larger than 0.1. Why is that? `kk2
Hi, I'm using compareCluster() for GO analysis. I saw in some tutorial it directly fit a gene list in compareCluster() but some other tutorials list the genes based on some...
Hi, I ran comapreCluster and got the dot plots like below (just a part of the whole image): My purpose is to see what is the difference of GO between...
Thank you very much for the world-famous R bag, which saved the status quo of enrichment analysis. when I run res
### Prerequisites Dear YuLab-SMU I am trying to apply the GO enrichment to the results obtained in WGCNA. I was not able to get the data idirectly into R, so...
### Prerequisites I already checked the other post and I tried the solution, it work for hsa but for my specie didn't work. ### Describe your issue the code i...
Hi Everyone, Not sure but I started getting this error after trying to re-install Clusterprofiler. Error: package or namespace load failed for ‘clusterProfiler’ in loadNamespace(j = 3.23.2 is required I...
