`enricher`函数中的pvalueCutoff参数不起作用

[qizhengyang2017]

我用enricher函数做GO富集分析，代码如下

x <- enricher(
      query_gene,
      pvalueCutoff = 0.05, 
      qvalueCutoff = 0.2,
      pAdjustMethod = "BH",
      universe = background,
      TERM2GENE = go2gene_bp,
      TERM2NAME = des

  )
x@ontology <- 'BP'
GO_df <- x@result
write.table(GO_df, 'GO_out.txt',quote=F,row.name=F,sep='\t')

pvalueCutoff的作用是：adjusted pvalue cutoff on enrichment tests to report。但是在输出结果中，adjusted pvalue没有都小于0.05。如截图所示

[zhaojhweb]

Did you solve this problem?

[qizhengyang2017]

No. In the latest version, the problem still exists.