Marc-Alexandre Côté
Marc-Alexandre Côté
Hi @tashrifbillah, tractconverter has been deprecated in favor of [Nibabel](https://github.com/nipy/nibabel) for anything related to `.tck` or `.trk` file formats. Are you using the `.vtk` file format?
VTK format is very generic, different softwares might have different conventions on how to store streamlines information. So, it is not guaranteed that tractconverter will be able to convert them...
Which Python version are you using? TractConverter only supports Python 2.7. Also, note that TractConverter has been deprecated in favor of Nibabel for a few years now.
Hi. I wouldn't use TractConverter to do the conversion. See the following for an example of how to covert TRK to VTK using Dipy https://mail.python.org/pipermail/neuroimaging/2019-July/002006.html
There is an example file available here: https://github.com/MarcCote/tractconverter_test/blob/master/data/ascii.vtk
When writing a PBS file, I think you must provide a `-q` option, specifying the actual name of the queue to use on the cluster.
I think a have a better understanding of the issue now. When the file `commands.txt` with all the pending commands is huge, e.g. 2.5Gb worth of text, getting the next...
Maybe those are two distinct issues. Please @gauvinalexandre let us know :). @mgermain How is having a lot of commands to "dispatch" is not the intended purpose of smart-dispatch? You...
From what I understand speeding up the "picking a new command to execute" would solve both issues. I suggest "taking the last line of `commands.txt` (a.k.a. pending) as the next...