Eric Deveaud
Hello, FYI. all `run_*.sh` scripts from examples folder references programs as `.py` while installation strip the `.py` extension regards Eric
Hello, how can I setup the requested phylophlan databases for use on a cluster where compute nodes does not have network access. I would like to install phylophlan and provide...
hello, there is a lot of `subprocess.check_call` for std unix commands that can be replaced with, plain stdlib python calls or even pure python code eg ``` subprocess.check_call(['rm' => os.remove,...
Hello, while runnin the test suite for pyseer-1.3.5 I got this warning ``` RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode ``` see ``` gensoft@06b71d9a76fe tests]$ annotate_hits_pyseer significant_kmers.txt references.txt...
Hello `sumtree.py` get number of cpus using `num_cpus = multiprocessing.cpu_count()` which may be innacurate in a taskset context or a slurm allocation for example. see: ``` $ nproc 96 $...
Hello `minipolish/misc.py` uses multiprocessing.cpu_count() to ge the max value of threads. in ``` def get_default_thread_count(): return min(multiprocessing.cpu_count(), 16)``` but multiprocessing.cpu_count() is the number of cpu in the machine. But this...
hello, more than 200 comits since the last tagged version. would you mind to tag a new one ? regards Eric
Hello `tools/parallel.py` uses `multiprocessing.cpu_count()` to ge the number of available cpus which retruns the number of cpu in the machine. But this is not the same as the number of...
Hello `megahit` uses `multiprocessing.cpu_count()` to ge the max value of cpus//threads. but `multiprocessing.cpu_count()` is the number of cpu in the machine. But this is not the same as the number...
Hello, some tools uses `multiprocessing.cpu_count()` to ge the number of cpus. `multiprocessing.cpu_count()` return the number of cpu in the machine, But this is not the same as the number of...