Eric Deveaud

Hello we had to add `86` to `CMakeLists.txt` inn `CMAKE_CUDA_ARCHITECTURES` to allow libmolgrod to run on A100 cards NB we build libmolgrid and gnina to run on all cuda devices...

Hello, maybee you will want ta tag a release. github las tag available is 1.2.3. while repo is version 1.4.8 NB pip provides version 1.4.8 regards Eric

Client.instance(image, name) :: change name when it contains '-'

4

Hello, when one instanciate an instance giving a name that contains a `-` (minus sign). the generated instance have a name slightly changed to name whit `-` (minus) replaced by...

instance.run_command not working + Client.execute problem

8

Hello, while testing `singularity-cli` I encountered a problem with `instance.run_command` method. see: ``` from spython.main import Client a = Client.instance('/my/image.sif', name='foo') a.run_command(['ls']) Traceback (most recent call last): File "", line...

Hello, FYI fresh build of lumpy-sv-0.3.1 from https://github.com/arq5x/lumpy-sv/archive/refs/tags/v0.3.1.tar.gz and lumpy claims to be version 0.2.13 see: https://github.com/arq5x/lumpy-sv/blob/master/src/lumpy/lumpy.cpp#L77 Eric

Hello, lumpy_filter ends with an undefined exit value in case of success. when ```-Wall``` are in the CFLAGS flags, one can see ``` filter.c:378:1: warning: control reaches end of non-void...

libcfu :: compilation error

2

I'm trying to install Bamm from release tag 1.7.3 (https://github.com/Ecogenomics/BamM/archive/1.7.3.tar.gz) on a centos-8.2 system, using gcc/9.2.0 and pythton/2.7.17 I have a compilation error while building libcfu in order to have...

rdpclassifiertraindata download timeouts and breaks the build

6

hello, while trying to build a docker image for RDPTools I have a problem with the donload of the classifier training set that timesout see: ``` download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz...

Hello while testing micca I encounter the following problem. see: ``` /tmp/micca2/bin/micca tree -i ~tests/datas/micca/sample_data -o tree.tree --fasttree-gtr Error: FastTree protein_alignment > tree FastTree < protein_alignment > tree FastTree -out...

as code in micca/tp/_cutadapt.py for CutadaptError is just ```python class CutadaptError(Exception): pass ``` when cutadapt is not found by distutils find_executable, this code don't do nothing. ```python def _cutadapt_cmd(params): cutadapt_bin...