Eric Deveaud
> This stuff is tricky. I tried to make Bandage just call `which makeblastdb` to see where it is Hello instead of ```wich``` that may respond diferently given os, and...
same problem here with gnina-1.0.1 and cuda-11.7 sorry previous log is useless (parallel build.... it misses a lot of information....) here is a more relevant one. ``` make[3]: Entering directory...
hello, hacking `caffe/cmake/Cuda.cmake` to add 80 nand 86 capabilities to `Caffe_known_gpu_archs` allows gnina-1.0.2 to build with cuda-11.7 and to tun on A100 cards regards Eric
since canu 1.8 gnuplotTested disapeared see: from canu/1.8 Changelog ``` Option 'gnuplotTested' was removed. Failure to find or run gnuplot is now handled automagically. Issues #1084 and #1129. ```
back on this topic. problem is the memory computation performed by `Roary::External::Cdhit` which is wrong regarding the new cd-hit memory estimation see how version cd-hit performed the memory estimation ```...
I finally hacked `lib/Bio/Roary/External/Cdhit.pm` to force memory to unlimited ;-) harsh but functional ``` --- lib/Bio/Roary/External/Cdhit.pm.ori 2021-07-16 08:37:29.333069603 +0000 +++ lib/Bio/Roary/External/Cdhit.pm 2021-07-16 08:36:11.646064928 +0000 @@ -58,7 +58,10 @@ { my...
ouch !!! 0.25.2 as I was not abble to install pandas 0.25.1 ;-(
with pandas 0.25.1 it runs fine FYI due to https://github.com/pandas-dev/pandas/issues/34969 I had to force `numpy==1.18.5` in order to be abble to install pandas 0.25.1 regards Eric
IQ-TREE-2.0.6 frsh build with lsd2-1.7.1 compiled using the following: eigen/3.1.2 gcc/4.9.0 cmake/2.8.12.2 openmpi/2.0.1 ``` LDFLAGS="-Wl,-rpath,$GCC_ROOT/lib64 $LDFLAGS" \ cmake -DCMAKE_CXX_COMPILER=c++ \ -DCMAKE_C_COMPILER=gcc \ -DCMAKE_INSTALL_PREFIX=$(EXE) \ -DEIGEN3_INCLUDE_DIR=$$EIGEN_ROOT/include \ -DCMAKE_VERBOSE_MAKEFILE=ON \ -DIQTREE_FLAGS=omp \...
a more detailled example, R-3.3.1 requires zlib-1.2.8 and gmap uses zlib-1.2.7 so loading R then gmap lead to a switch in some loading R lead to libR.so linked to expected...