Eric Deveaud

hardware_concurrency returns number of all CPUs instead of available CPUs on Linux

1

`kmdiff` by default use `std::thread::hardware_concurrency()` to get the number of available threads. in cli.cpp but, because there's a but ;-) `hardware_concurrency` returns, when possible, the underlying hardware capability to run...

documentation, examples problems

1

Hello after compiling kmindex from sources. I tried to run the example scripts. 1_buildsh -> OK 2_register.sh -> FAILURE see: ``` rpm_maker:examples/data > sh 2_register.sh [2023-10-11 13:45:08.390] [error] [InvalidParamError] ->...

use command instead of locate

4

Hello, you may want to use 'command' instead of locate in order to find the path of auxiliary binaries command is posix and available on all unices. locate is not...

hello as in #17 please use sys.executable instead of python3 for kaptive call ``` sed -i -e "s|'python3 '|sys.executable + ' ' |" kleborate/kaptive.py ``` python3 is not available on...

loci_selector.pl

1

Hello while runnig loci_selector.pl I have a bunch of warnings it was runn with pan_genome_2.3.0.txt from test data ``` Use of uninitialized value in concatenation (.) or string at /local/gensoft2/exe/Panseq/3.2.1/lib/perl5/Modules/LociSelector/LociSelector.pm...

please check external command status

1

Hello, when running an external command it is a good practice to check the exit status of this one. simple example. remove mga from your path and start wrapper_phage_contigs_sorter_iPlant.pl in...

Hello, while looking at the README there is no references to the (prefered//recomended) version to use for external tools ``` Install the following into a "bin" directory: * HMMER (http://hmmer.janelia.org/)...

Hello, I would like to suggest that all required tools will be checked at startup time as it is curently done for hmmsearch, blastp, and diamond in wrapper_phage_contigs_sorter_iPlant.pl why all...

Hello, `unicycler.py`uses `multiprocessing.cpu_count()` to ge the number of cpus. `multiprocessing.cpu_count()` return the number of cpu in the machine, But this is not the same as the number of cpu **available**...

default number of cores

2

Hello `rapidmerge.py` uses `multiprocessing.cpu_count()` to ge the number of available cpuswhich retruns the number of cpu in the machine. But this is not the same as the number of cpu...