SCEVAN
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AntonioDeFalco
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...
Hi, thanks for your great work about SCEVAN! I found SCEVAN annotated confidentNormal cells , supplied by `norm_cells` ,as 'tumor'. How should i interpret an output like this ? Since...
Hi, I got the list file from my Seurat subject and perfomed the following script. can you help me? results
Hi Antonio, I add the fonction you said to me here to have the volcanoes plots :  And i got that mistake...
Hi, thank you for developing this wonderful tool! I have two questions related to multisample processing: 1) Error in comparison I got this error below when I processed 9 samples...
Hi thank you for your help about my previous problem. I have several questions about the program. Whats is the maximum numbers of cells ? In a test i have...
Dear Mr. AntonioDeFalco, Last day, I just re-running one sample data, then I found it seems like the results have some different. The tsne_scRNA.png, subclone numbers and tumor-No tumor identify...
Hello, thank you for your software! When I run the following command: results
Hello, when i input a matrix(33694 genes*660 cell), when for the 3rd step(Annotations gene coordinates), it shows that "The number of elements of the gene set is less than the...
Hello, Thank you for this wonderful package, it's very easy to use ! I have 2 questions: 1) I'm comparing 10 samples from 5 patients, pre and post treatment. That's...
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R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...