SCEVAN
SCEVAN copied to clipboard
AntonioDeFalco
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...
Hi, Thanks for developing this fantastic tool. I got a couple of problems when running my data. (1) I first ran it on a small dataset (single patients with about...
Hello, We were running this function below with no errors. However, while looking into the "output" folder, we cannot locate the "[MySample]_count_mtx_annot.RData" file. ``` r pipelineCNA(rawData, sample = "MySample", plotTree...
Good day! Thanks for developing this great tool! I have tested it, and it works well. However, I would like to know how I can add metadata that can be...
Hello! I have just obtained data from a TEA-seq experiment and am trying to run SCEVAN on the extracted gene expression data. I am receiving the following error: > results
Hello, when I analyzed CNV using the SCEAN, My code: count_mtx
Dear Antonio, I'm using your fantastic tool for the analysis of a melanoma single cell datasets. Everything works just fine, except for a sample. Its the same cell line with...
Thank you for this SCEVAN tool which I use a lot at the moment, I am analysing merged datasets to investigate patient-specificity among CNV subclones. However, using a merged dataset...
Hello, if I try to run this in parallel on a cluster with slurm I get a *** caught bus error ***, even if I give enough memory. I tried...
Metadata
Owner
Metadata
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...