Maxime U Garcia

Relevant code has been copy pasted from https://github.com/maxulysse/nf-core_variantannotation

cf: https://github.com/maxulysse/nf-core_variantannotation My idea was to split out the pipeline specific params in `nextflow.config` in its own config, that way, it's easy enough to move around and import (or deal...

@loipf Thanks a lot, I'm in the middle of refactoring, and I need to handle the references properly. sorry about that, I'll try to fix it ASAP

let's keep open until it's fixed

ok with me to provide template, guidelines and soft rules about how to deal with a release. It's a shame there is no release note template as there is for...

Note: For subworkflows, we don't always use modules, so only a warning. For subworkflows, snapshotting versions could be empty in some tests if we skip all the tools from said...

Related PRs: - https://github.com/nf-core/modules/pull/4418 - https://github.com/nf-core/modules/pull/4828 - https://github.com/nf-core/modules/pull/4831 - https://github.com/nf-core/modules/pull/4925

it seems that `vardictjava` was modified locally. Can you either patch it, or modify upstream and update?

you did that in your PR only? You should do that in the modules repo instead

> oh i see, I understand now. I've used seqera container. Is that acceptable? Otherwise, I can wait for when docker and singularity imgs are available - i've added it...