Maxime U Garcia
Maxime U Garcia
not sure we want that actually. People might already have solved that on their side. This is just to make it work for anyone wherever.
> Missing adding to README (maybe under a special section), but otherwise LGTM for me mainly missing if we actually want to do that or not...
> I have a feeling that this will break people's AWS batch workflows, as sign requests are needed to access most user-specific resources (legitimately). This will disable all sign requests...
Let's just close it
Yes, just need to remove this profile in demultiplex
It can stay open for now, I intend to finish this problem
Sorry, I missed @adamrtalbot's comment many moons ago. What I meant was since we have 2 workflows, why don't we try to run multiQC just once as an after step...
I think we managed to solve part of this with the nft-utils plugin
I'd check the https://pcingola.github.io/SnpEff/ and https://www.ensembl.org/info/docs/tools/vep/index.html website for it, they have tons of genomes and lots of different versions. We also mirror some of them in https://annotation-cache.github.io/