Maxime U Garcia
Maxime U Garcia
Could you share a samplesheet so I can try to reproduce this issue?
@nf-core-bot fix linting pretty please :pray:
good cath
Could you update CHANGELOG too?
hitting: ``` -[nf-core/rnaseq] Pipeline completed successfully with skipped sampl(es)- -[nf-core/rnaseq] Please check MultiQC report: 5/5 samples skipped since they failed 10000 trimmed read threshold.- ``` with stub level pipeline tests...
Related issues and PRs: - https://github.com/nf-core/tools/issues/3049 - https://github.com/nf-core/website/pull/2621
New error coming out of Picard: > `A field field parsed out of a read name was expected to contain an integer and did not. Read name: SRR6357072.6014972. Cause: String...
Picard/markduplicates is held back to 3.1.1 due to failing tests at the pipeline level cf https://github.com/nf-core/rnaseq/issues/1346
> Please update the changelog before any merge CHANGELOG updated
> This currently runs with > ``` > nextflow run main.nf -profile docker -c conf/benchmark.config --outdir '../test-sarek-bench' > ``` > On my local computer it starts running but when I...