zhanxw

@jiehuang001 the interim release version is here: http://zhanxw.com/rvtests/experimental/rvtests-20170613-01e018-linux64-static.tar.gz It prints “RVTESTS finished successfully” at the end of the stdout. I am working on the AF problem now. It's hard to...

Now I have changed the default frequency calculation method in this version (https://github.com/zhanxw/rvtests/releases/tag/v2.0.6). The AF should be positive all the time now. Thanks.

@dajiangliu tabix can do that. Can you paste the command?

Thanks. That's a good point and I will add allele frequency outputs.

Thanks Roos. I can replicate the problem. The VT analytic option should work. I will fix this bug.

From source code, https://github.com/zhanxw/rvtests/blob/master/src/Model.h#L2132, It looks like that I have not implemented the analytic VT method for binary trait. I plan to do it when I have more time.

Thanks for your report. I agree with you that this problem is likely to be caused by out of memory. I will try to make rvtests to give more information...

That's a good suggestion. What do you think @dajiangliu ?

Sorry for the confusion. Actually, you can process the ANN tag and group variants into a set file. Then the set file can be used along with `--setFile` option for...

@xchenscd BGEN does not have `DS` nor `GP` if my memory is correct. Internally, the dosage-like genotypes are used for association tests. Do you mean that calculate dosage from GP...