frequency rvtest single variant analysis

[medinacarolina]

Dear Zhan, I am runing a single variant analysis so my command:

../executable/rvtest --pheno pheno --inVcf example.vcf --single wald --out out1

And this command does not output does not report allele frequency , here the header

CHROM POS REF ALT N_INFORMATIVE Test Beta SE Pvalue

I work with a multiethnic cohort so lets say the allele frequency will depend on the subsample for which the phenotype is available. And in order to submit the results for meta-analysis I need to report the freq and it could be handy thus that the frequency is in the output of the program and not that I have to calculated in other software (e.g, PLINK) in parallel everytime I use rvtest

[zhanxw]

Thanks. That's a good point and I will add allele frequency outputs.

[medinacarolina]

Thanks a lot!

Sent from Samsung Mobile.

-------- Original message -------- From: zhanxw Date:01/11/2017 18:07 (GMT+01:00) To: zhanxw/rvtests Cc: "M.C. Medina Gomez" , Author Subject: Re: [zhanxw/rvtests] frequency rvtest single variant analysis (#11)

Thanks. That's a good point and I will add allele frequency outputs.

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