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zhanxw

Permutations on SKAT-O

The permutation test for SKAT-O has not implemented. Shall we put that on our todo-list? @dajiangliu

[ERROR] Error loading gene file or gene list is empty!

Your VCF file does not seem to have problem, but the the gene file have some problem. Can you check it again?

Problem with N_INFORMATIVE after --impute drop

Looks like a bug. Let me check.

Segmentation fault for score test (v20181226)

I am so sorry. The latest version fixed this https://github.com/zhanxw/rvtests/releases/tag/v2.0.9

rare variant analysis

Can you verify that the variants of the gene exist in the vcf file? Sent from my iPhone > On Mar 7, 2019, at 1:30 PM, sbaheti wrote: > >...

Grouping rare variants

@dajiangliu Can you answer this?

--rangeList is not subsetting for skato

Looks like a bug. I will check that.

BGEN format on UK Biobank data does not work properly

The sample order should not affect EAF calculation. Let me check again. Thanks very much.

installation fault

Which system did you use? More information will be helpful. On Tue, Nov 17, 2020 at 10:25 AM flapa86 wrote: > Hi, I have this error > > make[1]: Entering...

unbelievable slow speed for --siteFile

I'm working on that. That does seem to unreasonably slow. I will follow up on this. Xiaowei > On Apr 30, 2017, at 12:22 AM, jiehuang001 wrote: > > Please...