zhanxw

mmseqs much slower than the MMseqs2 MSA server

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## Expected Behavior The analysis finished in minutes on MMSeq2 MSA server using colabfold ## Current Behavior Local mmseqs always paused for hours without generating outputs ## Steps to Reproduce...

Hello, the following code took a long time (> 5 minutes) to list 5 items, and it eventually crashed. I expect these 6 lines should return results in

tail: invalid option -- 'r'

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tail 8.13 does not support "-r" option. ~> alias gitjk="history 10 | tail -r | gitjk_cmd" ~> gitjk tail: invalid option -- 'r' Try `tail --help' for more information.

Server addresses in the example

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In the BGT example, on my server, 0.0.0.0 does not work: ``` curl -s '0.0.0.0:8000' | less -S # help curl -s '0.0.0.0:8000/?a=(impact=="HIGH")&s=(population=="FIN")&f=(AC>0)' ``` I switched it to 127.0.0.1 and...

My package `seqminer` failed the check in recent CRAN pretest. https://win-builder.r-project.org/incoming_pretest/seqminer_7.9_20200227_000648/Debian/00check.log Since the test was performed using gcc9, can rhub add a platform with gcc9?

Syrupy is really helpful. Have you consider hosting Syrupy release on PyPI?

I created the app.R file using `golem::add_shinyserver_file(".")` based on https://engineering-shiny.org/deploy.html#deploying-apps-with-golem . Then this package can be used on shiny-server.

Add HTTP/2 support e.g. "HTTP/2 200" will break the original code

When I tried this notebook (https://github.com/IntelLabs/fastRAG/blob/main/examples/optimized-embeddings.ipynb), I got this error: >>> >>> doc_embedder.warm_up(); query_embedder.warm_up() config.json: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 747/747 [00:00>> >>> import torch >>> torch.__version__ '2.4.1+cu121' I am using Python 3.8.20 |...