celseq2

celseq2 copied to clipboard

Missing input files for rule COOK_ANNOTATION:

1

Hi guys, I encounter this error when performing the dry-run. I am not sure how to resolve this issue. ``` MissingInputException in line 507 of ./celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake: Missing input files for...

iichelhadi

Hello, I am trying to run the pipeline but the count matrix has all zeros for everything each time. Another issue is that I specify 'gene_id' for annotations but the...

rayajallad

Greetings, The following is my mode and the error i am getting while using celseq2 pipeline. My code: celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10 I got the following...

parichitran

installation issues

2

I am using Python 3, But the installation of celseq2 is unsuccessful.

tapas83

ERROR: Error in rule COOK_ANNOTATION:

1

I got a problem shown below when i conduct the celseq2 pipeline. shakename v 5.5.2 is installed Some parts of the configfiles is > ##Annotations## > ##Where is the GTF.gz/GFF.gz/GTF/GFF...

YAOJ-bioin

plotly vs xlmhg version conflict

2

Hi Author, I have tried to run the celseq2 after installation. However, there is a serious version conflict between plotly and xlmhg. The current version plotly does not work with...

mthang

ImportError: cannot import name 'snakemake'

1

Hi, I am trying to run the celseq2 pipeline, but I kept getting this error, which I cannot solve. Maybe you can help? Code: nice -15 celseq2 --config-file /home/karjosukarso/celseq2/celseq_config.yaml --experiment-table...

dwkarjosukarso

Database used here

1

Hi, It is unclear here and in your paper what database you are using at the time you are aligning reads against the reference with bowtie2. Is the following what...

jfouret

- [ ] if the parameters are properly set - [ ] if the input files are accessible: - [ ] GTF/GFF - [ ] command availability - [ ]...

Puriney