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RuleException: ContextualVersionConflict in line 520 of /path-to/celseq2_beta.snakemake:

Open parichitran opened this issue 2 years ago • 0 comments

Greetings, The following is my mode and the error i am getting while using celseq2 pipeline. My code: celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10

I got the following error in terminal: Error in rule COOK_ANNOTATION: jobid: 0 output: result_dir1/annotation/Homo_sapiens.GRCh38.pickle, result_dir1/annotation/Homo_sapiens.GRCh38.csv, _done_annotation

RuleException: ContextualVersionConflict in line 520 of /path-to/celseq2/workflow/celseq2_beta.snakemake: (plotly 2.7.0 (/path-to/.local/lib/python3.8/site-packages), Requirement.parse('plotly>=3'), {'xlmhg'}) File "/path-to/.local/lib/python3.8/site-packages/celseq2/workflow/celseq2_beta.snakemake", line 520, in __rule_COOK_ANNOTATION File "/path-to/.loca/lib/python3.8/site-packages/genometools/init.py", line 24, in File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 901, in require File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 792, in resolve File "/usr/lib/python3.8/concurrent/futures/thread.py", line 57, in run Exiting because a job execution failed. Look above for error message [ Thu Mar 3 12:56:57 2022 ] Demultiplexing ends /path-to/SRR4246941_1.fastq.gz--/path-to/SRR4246941_2.fastq.gz.

touch _done_combodemultiplex Dynamically updating jobs [Thu Mar 3 12:56:57 2022] Finished job 13. 1 of 13 steps (8%) done Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: path-to/testcodes/umo/.snakemake/log/2022-03-03T125639.227066.snakemake.log

Thanks in advance

parichitran avatar Mar 03 '22 07:03 parichitran