celseq2
celseq2 copied to clipboard
RuleException: ContextualVersionConflict in line 520 of /path-to/celseq2_beta.snakemake:
Greetings, The following is my mode and the error i am getting while using celseq2 pipeline. My code: celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10
I got the following error in terminal: Error in rule COOK_ANNOTATION: jobid: 0 output: result_dir1/annotation/Homo_sapiens.GRCh38.pickle, result_dir1/annotation/Homo_sapiens.GRCh38.csv, _done_annotation
RuleException:
ContextualVersionConflict in line 520 of /path-to/celseq2/workflow/celseq2_beta.snakemake:
(plotly 2.7.0 (/path-to/.local/lib/python3.8/site-packages), Requirement.parse('plotly>=3'), {'xlmhg'})
File "/path-to/.local/lib/python3.8/site-packages/celseq2/workflow/celseq2_beta.snakemake", line 520, in __rule_COOK_ANNOTATION
File "/path-to/.loca/lib/python3.8/site-packages/genometools/init.py", line 24, in
touch _done_combodemultiplex Dynamically updating jobs [Thu Mar 3 12:56:57 2022] Finished job 13. 1 of 13 steps (8%) done Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: path-to/testcodes/umo/.snakemake/log/2022-03-03T125639.227066.snakemake.log
Thanks in advance