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Missing input files for rule COOK_ANNOTATION:

Open iichelhadi opened this issue 2 years ago • 1 comments

Hi guys, I encounter this error when performing the dry-run. I am not sure how to resolve this issue.

MissingInputException in line 507 of ./celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Missing input files for rule COOK_ANNOTATION:
wonderful_experiment_table.txt

Any help would be greatly appreciated.

iichelhadi avatar Dec 10 '22 13:12 iichelhadi

I may have resolved the issue by providing the full path to the wonderful_experiment_table.txt file but now have an new error

WildcardError in line 396 of /celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Wildcards in params cannot be determined from output files. Note that you have to use a function to deactivate automatic wildcard expansion in params strings, e.g., `lambda wildcards: '{test}'`. Also see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#non-file-parameters-for-rules:
'line'

Any help would be greatly appreciated.

iichelhadi avatar Dec 10 '22 14:12 iichelhadi