xiekunwhy

bam list support

3

Hi, Is there an option to support bam list input? if some one have many bam files. Best, kun

So many Plantae and so little Animalia

1

Hi, I found that there are many Plantae sequences and just a little Animalia sequences in TransposonDB.fasta, is that normal? grep ">" TransposonDB.fasta|wc -l 891052 grep ">" TransposonDB.fasta| grep -i...

Difference between v1.2 and v1.2a.1?

10

Hi, What are the differece between v1.2 (git clone from github source and compiled) and v1.2a.1( install using conda)? I got differece results using these two version, it seem that...

How you ever seen a hic heatmap like this one?

1

Hi, How you ever seen a hic heatmap like this one? Are there serious problem in contig or hic data? Waiting for your suggestions, thank you very much. Best, Kun...

Contig was cutted continually

1

Hi, I found that YaHS cut some contigs continually like following (utg261 in scaffold_28), why don't join these continually pieces or add an option to join them? scaffold_28 1 22000...

Hi, After reading all repositories in https://github.com/gorpipe, I still don't know how to use SparkGOR to perform joint-genotyping (like this paper described https://www.biorxiv.org/content/10.1101/2022.10.25.513331v3). Would you please provide a real world...

Hi, Is missing data affect the performance of snpbinner, and do you have any suggestion about max missing rate when using this program? Best regards, Kun

C stack usage 7972740 is too close to the limit

3

Hi, I got following errors when using [ggVennDiagram](https://github.com/gaospecial/ggVennDiagram), do you known why? ``` library(ggplot2) library(ggVennDiagram) vdat