xiekunwhy

Bad file descriptor

1

Hi, When I use pblat, I always get following errors (both github and biconda version): Bad file descriptor Write error to .psl what's wrong? here is my command line pblat...

Hi, Many reviewers ask us to provide marker R2 when we want to publish our results. And how can I get them from emmax results? Best wishes, Kun

Hi, Can I use minia as a rna-seq denovo assembler? Best, Kun

Is minia suitable for high heterozygous rate plant genome?

5

Hi, I am looking for some assemblers to assemble a high heterozygous rate plant genome(diploid, het rate > 2%, haplotype genome size ~3.6G). And I want to know how to...

Hi, For inbred species (like many plants/crops), it is easy to get multiple years/locations observed results for a single trait, can limix use these multiple years/locations results to map GxE-related...

Who can explain extrinsic.M.RM.E.W.cfg column 2-4 in [GENERAL] section

1

Hi, Why extrinsic.M.RM.E.W.cfg has one more column before extrinsic columns, and what column 2-4 means? Why other extrinsic.cfg files have one column less than extrinsic.M.RM.E.W.cfg before extrinsic columns?  Also...

Hi Just a question, Is there a tool to convert bam file to juicer's merged_nodups.txt file? Best, Kun

Hi, How to understand "species-specific orthogroups", are they paralog groups if gene number in these groups are > 1? Best, Kun

Large genome or large chromosome

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Hi, I found that gffread (v0.12.7.) can not deal with large chromosomes, we may find minus coordinates when using gffread to deal with such large chromosomes, for example, for a...

Any way to keep the last stop codon results(*) when using -y option?

1

Hi, I can not find any option to keep the last stop codon results (a star * or a dot .) when using -y option in latest version of gffread....